Paper Certificates



ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB  operon in Azospirillum brasilense Elisa Terumi Rubel, Roberto Tadeu Raittz, Nilson Antonio da Rocha Coimbra, Michelly Alves Coutinho Gehlen, Fabio de Oliveira Pedrosa, 
GapBlaster – A graphical gap filler for prokaryote genomes Pablo de Sá, Fábio Miranda, Adonney Veras, Siomar Soares, Kenny Pinheiro, Luís Guimarães, Vasco Azevedo, Artur Silva, Rommel Ramos, 
BARHL1 is downregulated in Alzheimer’s disease and may regulate cognitive functions through ESR1 and multiple pathways Debmalya Barh, María E. García-Solano, Neha Jain, Antaripa Bhattacharya, José García-Solano, Daniel Torres-Moreno, Sandeep tiwari, Belén Ferri, Krishna Kant Gupta, Artur Silva, Vasco Azevedo, Preetam Ghosh, Pablo Conesa-Zamora, Kenneth Blum, George  Perry
Homology modeling provides structural insights into tospovirus nucleoprotein Rayane Nunes Lima, Muhammad Faheem, João Alexandre Ribeiro Gonçalves Barbosa, Fernando Lucas Melo, Renato  Oliveira Resende, 
Leveraging High Performance Computing for Bioinformatics: A Methodology that Enables a Reliable Decision-Making Mariza Ferro, Marisa F. Nicolás, Guadalupe Saji, Antonio R. Mury, Bruno Schulze, 
Mapping SOS system in Leptospira spp Lívia de Moraes Bomediano, Renata Maria Augusto da Costa, Ana Carolina Quirino Simoes, 
Streptococcus pyogenes serotype M1 outbreak in Brazil reveals genomic variations among lethal invasive strains Gabriel R. Fernandes, Aulus E. A. D. Barbosa, Renan N. Almeida, Fabiola F. S. Castro, Marina C. P. Ponte, Celio Faria-Junior, Fernanda M. P. Müller, Antônio A. B. Viana, Dario Grattapaglia, Octavio L. Franco, Sergio A. Alencar, Simoni C. Dias
Compromise or optimize? The breakpoint anti-median Caroline Anne Larlee, Alex Brandts, David Sankoff, 
Comparing genomes with duplicate genes by DCJ and single gene indels Diego Rubert, Pedro Feijão, Marília Braga, Jens Stoye, Fábio Martinez, 
Computer aided identification of a hevein-like antimicrobial peptide of bell pepper leaves for biotechnological use Patrícia Dias Games, Elói Quintas Gonçalves da Silva, Meire de Oliveira Barbosa, Hebréia Oliveira Almeida-Souza, Patrícia Pereira Fontes, Marcos Jorge Magalhães-Jr, Paulo Roberto Gomes Pereira, Maura Vianna Prates, Glória Regina Franco, Alessandra Faria-Campos, Sérgio Vale Aguiar Campos, Maria Cristina Baracat-Pereira
SOFTWARE SURVEY FOR BREAST IMAGE PROCESSING Francisco Adelton Alves-Ribeiro, Miguel de Sousa Freitas, Benedito Borges da Silva, Francisco das Chagas Alves-Lima, Carla Solange Escórcio-Dourado, Fabiane Araújo Sampaio, Luana Mota  Martins, 
In silico selection of immunoglobulin sequences produced by phage display technology Heidi Muniz, Rafael Trindade Burtet, Thaís Costa Lamounier, Tainá Raiol, Nalvo Franco Almeida, Andrea Queiroz Maranhão, Marcelo Macedo Brigido, 
A statistical method for the functional classification of gene regulatory networks Gustavo H. Esteves, Luiz F. L. Reis
A systematic comparative evaluation of biclustering techniques Victor Padilha, Ricardo Campello
Improving sensitivity in shotgun proteomics using cost sensitive artificial neural networks and a threshold selector algorithm Fabio R Cerqueira, Adilson M Ricardo, Alcione P Oliveira, Armin Graber, Christian Baumgartner, 
Generating transcriptional networks through using text mining techniques for Prokaryotic organisms Rafael Pereira, Hugo Costa, Sónia Carneiro, Giovani Librelotto, Miguel Rocha, Rui Mendes
The identification of DNA binding regions of the σ54 factor using artificial neural network Lucas Martins Ferreira, Roberto Raittz, Jeroniza Nunes Marchaukoski, Vinícius Almir Weiss, Izabella Castilhos Ribeiro dos Santos-Weiss, Paulo Afonso Bracarense, Ricardo Voyceik, Liu Un Rigo
Tissue-aware age prediction from DNA methylation data Marcelo Rodrigo Portela Ferreira, Ricardo Prudêncio, Wolfgang Wagner, Ivan Costa
BMPOS: The most flexible and user-friendly tool sets for microbiome studies. Victor Pylro, Daniel Morais, Francislon de Oliveira, Fausto dos Santos, Leandro Lemos, Guilherme Oliveira, Luiz Roesch, 
Optimizations in multiple sequence alignment algorithm using parallel score estimating and ant colony Geraldo Francisco Donega Zafalon, Evandro Augusto Marucci, Leandro Alves Neves, Carlos Roberto Valencio, Anderson Rici Amorim, Adriano Mauro Cansian, Jose Roberto Almeida Amazonas, Liria Matsumoto Sato, Jose Marcio Machado, 
GPCRs from Fusarium graminearum detection, modeling and virtual screening - the search for new routes to control Head blight disease Emmanuel Bresso, Roberto Togawa, Kim Hammond-Kosack , Martin Urban, Bernard Maigret, Natalia Martins
Identification of ubiquitylation sites through multiobjective genetic algorithm NSGA-II Paulo Cardoso, Reginaldo Filho, Claudomiro Sales, Regiane Kawasaki, Manoel Lima, Vitor Lima
Mirnacle: Machine learning with SMOTE and random forest for improving selectivity in pre-miRNA ab initio prediction Yuri B Marques, Alcione P Oliveira, Ana Tereza R Vasconcelos, Fabio R Cerqueira
An Integrative in-silico Approach for Therapeutic Target  Identification in the Human Pathogen Corynebacterium diphtheria Syed Babar Jamal, Syed Shah Hassan, Sandeep Tiwari, Marcus V Viana, Leandro de Jesus Benevides, Asad Ullah , Javed  Ali , Adrián G Turjanski , Debmalya Barh, Preetam Gosh, Henrique C P  Figueiredo, Artur Silva , Vasco AC Azevedo 
The Druggable Pocketome of Corynebacterium diphtheriae as a Tool for Novel Targets Identification Syed Shah Hassan, Leandro G Radusky , Syed Babar Jamal , Sandeep Tiwari , Paulo Vinicius Sanches Daltro de Carvalho, Javed Ali , Asad Ullah , Henrique C Figueiredo, Debmalya Barh, Artur Silva, Adrian Gustavo Turjanski , Vasco AC Azevedo
New Genome Similarity Measures based on Conserved Gene Adjacencies Luis Antonio B. Kowada, Daniel Doerr, Simone Dantas, Jens Stoye
Mitigating the lack of knowledge about long noncoding RNA: Extracting Biological Functions from Biomedical Literature Yagoub A.I. Adam, Evandro Eduardo Seron Ruiz, Alessandra Alaniz Macedo, 
SIMBA: a web tool for managing bacterial genome assembly Diego C. B. Mariano, Felipe L. Pereira, Edgar L. Aguiar, Letícia C. Oliveira, Leandro Benevides, Luís C. Guimarães, Edson L. Folador, Thiago J. Sousa, Preetam Ghosh, Debmalya Barh, Henrique C. P. Figueiredo, Artur Silva, Rommel T. J. Ramos, Vasco A. C. Azevedo
A systematic review of phylogenetic analysis of a specific gene Priscilla Koch Wagner, Vivian MY Pereira, Luciano Antonio Digiampietri, 
Bacterial whole genome comparison: a systematic literature review Vivian Pereira, Priscilla Wagner, Luciano Digiampietri, 
Comparative genomics analysis uncovers candidate drug targets for Malaria: Using workflows for drug targeting Kary A. C. S. Ocaña, Daniel de Oliveira, Marco T. A. Garcia-Zapata, Marta Mattoso
A general framework for the gene family-free genome rearrangement problem Pedro Feijao
SnoReport 2.0: new features and a refined Support Vector Machine improve snoRNA identification João Victor de Araujo Oliveira, Fabrizio Costa, Rolf Backofen, Peter F. Stadler, Maria Emília M. T. Walter, Jana Hertel
Rqc - a Bioconductor package for quality control of high-throughput sequencing data Welliton Souza, Benilton de Sá Carvalho, Iscia Lopes-Cendes, 
REMOVED UPON AUTHOR REQUEST
A graph database approach to reconstruct and visualize metabolic networks Waldeyr Mendes Cordeiro Silva, Danilo Jose Vilar, Daniel Silva Souza, Marcelo Macedo Brigido, Maria Emilia Machado Telles Walter, Maristela Terto Holanda
Towards the Semantic Composition of Gene Expression Analysis Services Gabriela Der Agopian Guardia, Luís Ferreira Pires, Eduardo Gonçalves da Silva, Cléver Ricardo Guareis de Farias
AutoModel: new tool for interactive protein homology modeling Joao Luiz de Almeida Filho, Jorge Hernandez Fernandez
SwiftGECKO: a provenance-enabled parallel comparative genomics workflow Maria Luiza Mondelli, Oscar Torreño, Kary A. C. S. Ocaña, Marta Mattoso, Michael Wilde, Ana Tereza Vasconcellos, Oswaldo Trelles, Luiz M. R. Gadelha