Poster Presentation Schedules
Below you will find information on your poster session and number.
| RNA and Transcriptomics - 16th November | |||
| Code | Subm ID | Presented by | Tittle |
| TR01 | 36482 | Adriele Vieira de Souza | miRNAs Expression and in silico Prediction of Targets Related with Resistant Exercise and Carbohydrate/Protein Supplementation |
| TR02 | 38832 | Alan Péricles Rodrigues Lorenzetti | Lsm-bound antisense RNAs play role in Halobacterium salinarum NRC-1 transposition regulation |
| TR03 | 38541 | Ana Maria Benko-Iseppon | De novo transcriptome assembly of the extremophile plant Calotropis procera |
| TR04 | 38631 | Ana Paula Vimieiro Martins | Tityus serrulatus venom gland: new sodium channel toxins through RNA-Seq |
| TR05 | 37368 | Andre Luiz Martins Reis | Annotation and analysis of the dynamics of splice acceptor sites in Trypanosoma cruzi under gamma radiation stress |
| TR06 | 38645 | André Mauricio Ribeiro dos Santos | PiRNA signatures of adjacent to tumor tissue as potential biomarkers of gastric carcinogenesis |
| TR07 | 38939 | André Rocha Barbosa | Differential Gene Expression Analysis of Placentas from Mus musculus Exposed to Different Stress Conditions |
| TR08 | 38683 | Antônio Pedro de Castello Branco da Rocha Camargo | Analysis of the lincRNA transcriptome in the accessory olfactory system |
| TR09 | 36385 | Carlos Bruno de Araujo | Preliminary analysis of microRNAs and their pathway genes in the genome of Globodera pallida. |
| TR10 | 37463 | Aline Duarte Gomes | Differential expression in colorectal cancer progression |
| TR11 | 37309 | Cristóvão Antunes de Lanna | Comparative analysis of gene expression data between colorectal cancer cell lines with wild-type and silenced MMR genes |
| TR12 | 37318 | Daniela de Laet Souza | Functional and structural characterization of RBP42 in Trypanosoma cruzi |
| TR13 | 37319 | Daniela Ferreira Chame | RNA-binding proteins ALBA3 and DRBD3 characterization on Trypanosoma cruzi under gamma irradiation stress |
| TR14 | 36741 | Danillo Cunha de Almeida e Silva | Archaeal RNA polymerase pausing modeling and its gene expression control impacts |
| TR15 | 36420 | Deborah Antunes | Human riboswitch: are we close to predicting it? |
| TR16 | 37375 | Eddie Luidy Imada | De novo assembly of Trypanosoma cruzi strain CL Brener transcriptome |
| TR17 | 37487 | Edson Oliveira | Comparative transcriptome profiling of virulent and non-virulent Trypanosoma cruzi underlines a role of surface proteins during infection |
| TR18 | 37378 | Erik de Oliveira Martins | Evaluating RNA single bulges with a mesoscopic model |
| TR19 | 38885 | Fabio Ivan Reinoso Vilca | Proposal of a data mining pipeline to improve bacterial small RNA prediction |
| TR20 | 38810 | Felipe Ciamponi | Caprin-1 binding profile to target RNAs via enhanced CLIPseq |
| TR21 | 37970 | Fernanda Alves de Freitas Guedes | Transcriptional memory contributes to tolerance to multiple drought exposures in coffee (Coffea canephora) plants |
| TR22 | 38412 | Fernanda Cristina Medeiros de Oliveira | The assessment of the impact of small deletions within human protein domains using transcriptome data: a preliminary analysis. |
| TR23 | 38303 | Flavia Figueira Aburjaile | Integrative analysis of transcriptomics and metabolomics data: adaptation of Propionibacterium freudenreichii to long-term survival in nutritional shortage |
| TR24 | 37436 | Gabriela Flavia Rodrigues Luiz | Transcriptome profiling in Leishmania amazonensis promastigotes associated with virulence attenuation |
| TR25 | 37349 | Izabela Coimbra Ibraim | Transcriptome analysis of Corynebacterium pseudotuberculosis in an iron deficient environment |
| TR26 | 37812 | Izabela Ferreira | Optimized RNA nearest-neighbor enthalpy and entropy parameters as function of salt concentration |
| TR27 | 38437 | Jean Carlos Machado da Costa | Non-coding RNAs in the genus Aeromonas |
| TR28 | 38381 | Jéssica Noronha Blanco | Single nucleotide variation analysis in microrna target regions in colorectal cancer |
| TR29 | 36652 | Júlia Silveira Queiroz | Preliminary analysis of Dicer-like genes in Cucumber genome |
| TR30 | 37137 | Katia de Paiva Lopes | Transcriptome meta-analysis reveals the human organs evolution |
| TR31 | 37488 | Kendi Nishino Miyamoto | Acute Myeloid Leukemia gene co-expression networks and differential expression analysis in blood and bone marrow samples |
| TR32 | 40035 | Luciana M. Oliveira | Transcriptional landscape of Paracoccidioides brasiliensis: an isolate presenting no dimorphism shift |
| TR33 | 38393 | Luciana Souto Mofatto | Transcriptome analysis of high-temperature stress in yeast during industrial scale bioethanol production |
| TR34 | 37820 | Lucio Rezende Queiroz | Sequence-independent metagenomic analysis of animal viromes based on molecular characteristics of small RNAs |
| TR35 | 38614 | Luiz Augusto Bovolenta | Integrative bioinformatics data analysis of Nile Tilapia microRNAs |
| TR36 | 37336 | Matheus Carvalho Bürger | Long Noncoding RNAs in Patients with Dengue: Insights into Gene Regulation |
| TR37 | 38598 | Mauro de Medeiros Oliveira | TFBS prediction in sugarcane using binding sites prediction from PlantTFDB server |
| TR38 | 38793 | Michele Araújo Pereira | Trypanosoma cruzi coding transcriptome in response to gamma radiation |
| TR39 | 38533 | Natasha Jorge | PIWI-interacting RNA and small nucleolar RNA signatures of smokers and non-smokers in lung adenocarcinoma |
| TR40 | 37321 | Nayara Toledo | Occurrence of differential alternative splicing in the transcriptome of mice hearts infected with two strains of Trypanosoma cruzi |
| TR41 | 38224 | Pâmella Miranda de Moura | Effect of Cy3 and Cy5 dyes on the hydrogen bonds of oligonucleotides |
| TR42 | 37458 | Rajesh Kumar Gazara | De novo transcriptome assembly and comparative expression profiling of midgut tissues of four non-model insects |
| TR43 | 37811 | Raquel Calloni | Non-coding RNAs putatively acting as ceRNAs in embryonic stem cells |
| TR44 | 37399 | Rodolfo Vieira Maximiano | Study on the variation of RNA Secondary Structure prediction as a function of Thermodynamic Parameters |
| TR45 | 37410 | Rodrigo Bentes Kato | Analysis and comparison of force field of RNA using molecular dynamic simulations. |
| TR46 | 37494 | Samara Damasceno | Large scale transcriptional analysis of an animal model of seizures |
| TR47 | 38835 | Samara Mireza Correia de Lemos | Non coding RNAs in Coffea canephora genome: Identification by similarity. |
| TR48 | 38515 | Sandra Grossi Gava | Altered gene expression by control unspecific dsRNAs: an inquiry |
| TR49 | 38043 | Tamires Priscila | Mirtrons: computational feature analysis and miRNA comparison |
| TR50 | 37965 | Tatianne da Costa Negri | LncRNAplant-Finder: a tool for predicion of long non coding RNAs in plants |
| TR51 | 38884 | Thaís de Almeida Ratis Ramos | Distinguishing coding and non-coding RNA sequences and improving its functional annotation using machine learning approaches |
| TR52 | 38273 | Thiago Cardoso Pereira Carneiro | SNP discovery in the Klebsiella pneumoniae transcriptome after polymyxin B induction in combination with abiotic stresses using RNA-Seq technology |
| TR53 | 38802 | Pâmela Marinho Rezende | Combined genome guided and long reads assembly of the Coffea arabica trascriptome |
| TR54 | 38805 | Pâmela Marinho Rezende | Assembly, identification and characterisation of sugarcane transcripts |
| TR55 | 38818 | Thales Henrique Cherubino Ribeiro | Comparison of the Expression profile between embryogenic and non-embryogenic Coffea arabica L. calli through RNA-Seq data analyses using combination of DE algorithms |
| TR56 | 38826 | Thales Henrique Cherubino Ribeiro | Genome-wide identification and in silico characterization of microRNAs and their targets in Ananas comosus L. |
| TR57 | 38722 | Thiago Mafra Batista | Molecular diversity of the venom gland from Peruvian scorpion Hadruroides lunatus revelead by transcriptome analysis. |
| TR58 | 37300 | Tiago Bruno Rezende de Castro | Transcriptome analysis of mice hearts infected with two strains of Trypanosoma cruzi: Insights into the parasite effects on the host gene expression |
| TR59 | 37735 | Vivianne Basílio Barbosa | Determining the stability of DNA/RNA hybrid duplexes |
| TR60 | 38688 | Willian Santos Prado | Identifying gene clusters in the genome of Trypanosoma cruzi |
| Phylogeny and Evolution – 16th November | |||
| Code | Subm ID | Presented by | Tittle |
| PE01 | 38669 | Alberto F. de Oliveira Junior | key amino acids in understanding evolutionary characterization of Mn/Fe-Superoxide Dismutase: A phylogenetic and structural analysis of proteins from Corynebacterium and hosts |
| PE02 | 37157 | Anderson Coqueiro dos Santos | B-cell epitopes prediction in trypanosomatids genome core |
| PE03 | 37543 | Anderson Fernandes de Brito | Reconstructing ancestral protein-protein interactions of virus-host systems |
| PE04 | 38609 | Antonio A A Pires | Tardigrades (Ecdysozoa: Tardigrada) A general review of the record in gene database of Cytochrome Oxydase I (COI) and the Damage Suppressor gene (DSUP). |
| PE05 | 37593 | Beatriz Moura Kfoury de Castro | Study of the origin of the genes controlling flower development |
| PE06 | 37275 | Braulio Roberto Gonçalves Marinho Couto | Construction of alternative algorithm for development of phylogenetic trees using InterPro entries and frequency vectors of tri-peptide |
| PE07 | 38542 | Camilla Reginatto De Pierri | mtDNA Data Mining: A Global Analysis |
| PE08 | 38520 | Carlos Alberto Xavier Gonçalves | GO-Genesis: finding the origin of biological processes and molecular functions from Gene Ontology |
| PE09 | 37406 | Daniela Ambros Quinsani | Inferring the demographic history of Cnesterodon brevirostratus using bioinformatics tools |
| PE10 | 38944 | Edgar Lacerda de Aguiar | Study of new molecular markers for Phylogenetic reconstruction of the black fungus in humans |
| PE11 | 38407 | Edson Machado Filho | ProteinWorldDB in a multidimensional representation of the Network of Life |
| PE12 | 38886 | ELISSON NOGUEIRA LOPES | Evolutionary origin of the proteins involved in the entry of and defense to the Ebola virus in the host cell |
| PE13 | 38720 | Eric Roberto Guimarães Rocha Aguiar | Analyzing molecular characteristics of small RNAs to assess the evolution of RNAi pathways |
| PE14 | 36692 | Fenícia Brito | Evolution of heterotrophy: Genes needed for regulation of the acidity of pancreatic juice appeared recently in man evolution |
| PE15 | 36971 | Gabriel da Luz Wallau | Mosquitoes Mobilome |
| PE16 | 38831 | isabela Alvim | Assortative Mating in Brazilian Populations |
| PE17 | 38854 | Julliane Dutra Medeiros | Insights into the population history of free-living bacteria as counted by their CRISPR inventory |
| PE18 | 38731 | LETICIA FERREIRA LIMA | Evaluation of the accuracy of the MLrelate kinship analysis program when no parents are sampled |
| PE19 | 36820 | Lissur Azevedo Orsine | Walking through old routes to reach new destinations: unraveling the origin of the mammary gland |
| PE20 | 38613 | NILSON DA ROCHA COIMBRA | Highly resolved phylogeny for Corynebacteriales |
| PE21 | 38690 | Paulo Massanari Tokimatu Filho | Analysis of comparative genomics reveal evidence of positive selection on pathogenicity-related genes of Witches' broom disease on cocoa trees |
| PE22 | 38369 | Ricardo Assunção Vialle | Secondary structure changes according to evolutionary age |
| PE23 | 37372 | Tarcisio José Domingos Coutinho | Biological modules associated with prophage density in pathogenic and commensal Escherichia coli |
| PE24 | 37439 | TETSU SAKAMOTO | Improving the supertree approach by analyzing protein clusters with paralogs and including distance data |
| Proteins and Proteomics - 16th November | |||
| Code | Subm ID | Presented by | Tittle |
| PR01 | 38509 | Adriano Velasque Werhli | Prediction of protein stability changes upon single point mutation using Ensemble Learning |
| PR02 | 37423 | Alexandre Victor Fassio | nAPOLI: a web tool for protein-ligand interactions analysis |
| PR03 | 37689 | Aline Beatriz Mello Rodrigues | Modeling MS native-state amide hydrogen exchange through structural and dynamical properties. |
| PR04 | 36965 | Anton Semenchenko | Characterization of the EF-IV (LepA) influence on mRNA translation by in-silico cell-free protein expression |
| PR05 | 38504 | Arthur de Carvalho e Silva | Bioinformatics approaches to identify, classify and prioritize protein kinases as drug targets in Schistosoma japonicum |
| PR06 | 38223 | Arun Kumar Jaiswal | In silcio Identification of common putative vaccine candidates against Treponema pallidum: A reverse vaccinology based approach |
| PR07 | 37455 | Carlos A. H. Fernandes | In silico structural studies of phospholipases A2 inhibitors from snake blood |
| PR08 | 36507 | Kauê Santana da Costa | Structural Analysis of Alba Proteins of Leishmania infantum |
| PR09 | 37544 | Kauê Santana da Costa | Mutational Analysis of Human K-ras G12C and Design and Molecular Docking of ARS-853 derivatives |
| PR10 | 40194 | Caroline Leonel Vasconcelos de Campos | Characterization of the proteome of four strains of Lactococcus lactis with biotechnological relevance |
| PR11 | 37671 | Charles A. Santana | GReMLIN: A graph mining strategy to infer protein-ligand interaction patterns |
| PR12 | 38888 | Ricardo Lemes Gonçalves | Screening of compounds candidate to inhibit the interaction monomer - monomer of the NS1 protein of dengue virus: an approach for docking and molecular dynamics. |
| PR13 | 38266 | Cristiane Toledo | T lymphocytes epitopes prediction to access immunological response from Chagas diseases patient samples |
| PR14 | 37085 | Diego Mariano | Structural pattern detection for engineering more efficient enzymes for second-generation biofuel production |
| PR15 | 37021 | Felipe de Lima Almeida | GAPC1 and HSP90.1 proteins may have an important role in the oxidative stress in Saccharum spp. |
| PR16 | 38942 | Fernando Limoeiro Lara de Oliveira | Automation of polyproteins GAG and GAG-POL-1 cleavage site mapping: A study of large scale molecular docking |
| PR17 | 38535 | Gabriel Monteiro da Silva | In Silico Binding Site Analysis of E6 Oncoproteins from High-Risk European HPV variants |
| PR18 | 36509 | Gustavo Santos de Oliveira | Non-Homology-Based Prediction of Protein Target Regions by Logistic Regression |
| PR19 | 36495 | Heitor Cappato | Ligand-Based Pharmacophore Modeling and Virtual Screening of Plant-Derived Ligands for the Alpha-Amylase and Alpha-Glycosidase |
| PR20 | 38822 | Kleber Santiago Freitas e Silva | Isocitrate lyase protein-protein interaction assay of Paracoccidioides spp. |
| PR21 | 38825 | Kleber Santiago Freitas e Silva | In silico repurposing of approved drugs for paracoccidioidomycosis |
| PR22 | 37548 | James Siqueira Pereira | Modeling and Molecular Docking of the largest subunit of the Ribulose-1,5-Bisphosfate Carboxylase/Oxygenase (RuBisCO) from Alkalinema sp. CACIAM 70d. |
| PR23 | 37438 | João Pedro Areias de Moraes | GASS-WEB: a web server for identifying enzyme active sites based on genetic algorithms |
| PR24 | 37374 | Joyce Villa Verde Bastos Borba | Definition and Comparative Analisis of the kinomes of Lesihmania infantum and L. braziliensis. |
| PR25 | 38559 | Júlia Barbieri de Oliveira Souza | In silico intrinsic disorder analysis of ß-crystallin B2 protein and mutations that cause congenital cataract |
| PR26 | 38508 | Karina Machado | Data Mining for characterization of nanotoxicity in mitochondrial ion channels induced by carbon nanotubes |
| PR27 | 38628 | Larissa Fernandes Leijoto | PPI-signature: homologous proteins interact with different partners in the same way |
| PR28 | 37089 | Lucas Carrijo de Oliveira | Using sequence weighting to improve residue correlation analisys |
| PR29 | 38636 | Luciane Sussuchi da Silva | Isocitrate Lyase of Paracoccidioides brasiliensis: Effects of Cofactor on Dynamical Stability and Virtual Screening of Natural Products |
| PR30 | 36689 | Lucianna Helene Silva dos Santos | Selecting structure-based virtual screening hits using chemoinformatics tools: a case study with HIV-1 reverse transcriptase |
| PR31 | 38816 | Manuela Leal da Silva | 24-c-sterol-methyltransferase as a target for the design of new anti-trypanosomatids drugs |
| PR32 | 38552 | Marcelo Querino Lima Afonso | Analysis of Amino Acid coevolved sets in the Low Molecular Weight Phosphatase protein family by Molecular Dynamics |
| PR33 | 38392 | Natalia Florencio Martins | In silico prediction and comparative studies on plant GPCRs |
| PR34 | 36494 | Núbia Souza Prates | Cluster analysis of AcrB protein molecular dynamics conformations |
| PR35 | 37717 | Otaviano Martins Monteiro | Comparison Between a Graph-Based Metodology and the LSQKAB to Check Proteins Similarities |
| PR36 | 37388 | Pedro Geraldo Pascutti | Protein Folding by Generalized Simulated Annealing and Molecular Dynamics Methods |
| PR37 | 38706 | Rafael Eduardo Oliveira Rocha | Inhibition Resistance Mechanism for the Product of Beta-Glucosidases, a Computational Approach |
| PR38 | 37256 | Rafael Ferreira Soares | Identification of druggable binding sites in ribose-5-phosphate isomerase of T. cruzi |
| PR39 | 37316 | Rafael Nicolay B. da Silva | New annotation strategies: from sequence to 3D structure |
| PR40 | 38723 | Rangeline Azevedo da Silva | Identification of non-homologous isofunctional enzymes in the antioxidant system of plants and phytopathogens |
| PR41 | 37329 | Ricardo Valle Ladewig Zappala | Prospecting novel proteins from Deinococcus radiodurans: a model for putative heat shock proteins |
| PR42 | 37910 | Rodrigo de Oliveira Almeida | Metabolic pathway prediction of enzymes: a machine learning approach |
| PR43 | 37393 | Samuel da Silva Guimarães | Mutation Analysis for AgrC from Staphylococcus aureus |
| PR44 | 37306 | Sócrates Soares Araújo Júnior | VERMONT: A tool for mutation visualization |
| PR45 | 38346 | Thaís Couto Laureano | Standardization of the ribosomal protein genes nomenclature in Leishmania major |
| PR46 | 37320 | Tiago Antônio de Oliveira Mendes | Metabolic changes of pathogenic and nonpathogenic Leishmania species during host cell infection by integration of mathematical models, quantitative proteomics and untargeted 1H-NMR |
| PR47 | 37253 | Vanessa dos Santos Silva | Molecular interactions between NF-?B and thiopheneacetamide during mycobacteria infection |
| PR48 | 38928 | Vinícius de Rezende Rodovalho | Development of a peptide-based electrochemical biosensor for juvenile idiopathic arthritis diagnosis |
| PR49 | 37385 | Viviane Correa Santos | Development of cruzain selective inhibitors by structure based virtual screening |
| PR50 | 37432 | Maria Cristina Baracat Pereira | Characterization of an antimicrobial peptide from eggplant leaves as an inhibitor of carboxypeptidase |
| PR51 | 37433 | Maria Cristina Baracat Pereira | Proteomic analysis of seminal plasma from stallions (Mangalarga Marchador) influenced by seasonality |
| PR52 | 38653 | Roosevelt Alves da Silva | Peptides modulators of malate synthase of Paracoccidioides brasiliensis obtained from Protein-Protein interactions and docking simulations |
| PR53 | 38710 | Roosevelt Alves da Silva | FlexSPS: A Monte Carlo update for protein refinement from I-TASSER models |
| PR54 | 36197 | Sabrina Mendonça | Molecular docking and structural optimization of bioactive compounds from natural products against 1-UAP of L. braziliensis |
| PR55 | 37248 | Sabrina Mendonça | Mutational Analysis of the Virion Infectivity Factor (Vif) of HIV-1 subtype F2 and its influence on the interactions with APOBECs |
| PR56 | 38800 | Liliane Pereira de Araújo | In silico study of Hypoxanthine-guanine Phosphoribosyltransferase inhibitors for drug design against Leishmania species |
| PR57 | 38804 | Liliane Pereira de Araújo | In silico screening of semi arid plant compounds targeting 5-Lipooxygenase (LOX) |
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| PR58 | 38811 | Wagner Rodrigues de Assis Soares | Virtual screening of natural compounds from Brazilian semi arid plants targeting GABA receptor inhibitors |
| Systems Biology and Networks - 17th November | |||
| Code | Subm ID | Presented by | Tittle |
| SB01 | 38692 | Andre Fonseca | An intuitive network-based approach to investigate clinical features among breast cancer subtypes |
| SB02 | 38914 | Caroline D Monteiro | GEN3VA: Aggregation and Analysis of Gene Expression Signatures from Related Studies |
| SB03 | 38807 | Edgar Lacerda de Aguiar | Analysis and Mining Onco-targets Breast through Ontology |
| SB04 | 38839 | Fabiano Sviatopolk Mirsky Pais | Gene network analysis of melanoma cancer development |
| SB05 | 38941 | Fernanda Caroline dos Santos | Metabolic pathways involved in bovine temperament |
| SB06 | 37567 | Fernando Marcon Passos | Using Systems Biology to understand Immunosenescence |
| SB07 | 38664 | Francisco Schneider | Design and Engineering of Synthetic Biological Systems for Medical Diagnosis |
| SB08 | 37472 | Gabriel Baldissera | Influence of a high-fat diet in the cerebellar tissue of Cockayne Syndrome mice |
| SB09 | 37670 | Iara Dantas de Souza | Construction of metabolic map in lead poisoning |
| SB10 | 37430 | Isaque Katahira | Pattern Recognition in genomic sequences: A case of study using complex networks |
| SB11 | 37289 | José Carlos Merino Mombach | Logical Modeling of Cellular Senescense Induced by DNA Damage and TGFbeta signaling |
| SB12 | 37384 | José Carlos Merino Mombach | A logical model for the bimodal p53 switch in cell-fate control |
| SB13 | 37353 | Ivan Rodrigo Wolf | Saccharomyces cerevisiae Protein-Protein Interaction Network Reconstruction to Study Ethanol Tolerance |
| SB14 | 37135 | Katia de Paiva Lopes | Global coexpression analysis of human protein-coding genes |
| SB15 | 38005 | Kelin Gonçalves de Oliveira | RTNsurvival: An R package for survival analysis from regulatory networks |
| SB16 | 38419 | Kelin Gonçalves de Oliveira | Interactome analysis of FGFR2 – a potential therapeutic target in breast cancer. |
| SB17 | 38655 | Lucas Miguel de Carvalho | Integrating omics data from xylose-fermenting yeast using network dynamic modeling for bioethanol production |
| SB18 | 38494 | Luciane Sussuchi da Silva | Gene Regulatory Network Modeling for Mycelium-to-Yeast Transition of Paracoccidioides brasiliensis |
| SB19 | 36886 | Mindy Muñoz Miranda | Cancer immunology of Cutaneous Melanoma: A Systems Biology Approach |
| SB20 | 38815 | Pablo Augusto de Souza Fonseca | Identifying metabolic processes shared among genome-wide association studies for reproductive phenotypes in bovine |
| SB21 | 36282 | Pedro de Sá Tavares Russo | CEMiTool: Co-expression Modules Identification Tool |
| SB22 | 38877 | Rayson Carvalho Barbosa | Ancestrality and evolution of genes related with apoptosis |
| SB23 | 38742 | Vincent Noel | SigNetSim : A web tool for modeling and analyzing quantitative biochemical networks |
| SB24 | 38792 | Vincent Noel | Hierarchical Model of the Ras-MAPK signalling pathway in mouse Y1 adrenocortical tumor cells |
| SB25 | 37532 | Vinicius Jardim Carvalho | ANOVA-like method for differential correlation of multiple networks analysis of biological data |
| SB26 | 38490 | João Pacifico Bezerra Neto | Understanding transcriptional strategy for Inositol pathway in soybean root dehydration stress tolerance |
| Genes and Genomics - 17th November | |||
| Code | Subm ID | Presented by | Tittle |
| GE01 | 38488 | João Pacifico Bezerra Neto | AMP-Identifier: A Unix shell script for antimicrobial peptide identification |
| GE02 | 38352 | Adhemar Zerlotini Neto | Detection of potential genetic variants affecting gene function in Guzerat cattle |
| GE03 | 36881 | Alexandra Antonieta Urrutia Zegarra | The first complete genome sequence of Streptococcus dysgalatiae subsp. dysgalactiae an emerging fish pathogen |
| GE04 | 37556 | Alexandre Hild Aono | Preliminary analysis of functional SNPs mining from GBS data using GATK in a sugarcane map population |
| GE05 | 37486 | Almir José Ferreira | Genome analysis of E. nigrum and other filamentous fungi reveals molecular mechanisms related to endophytic/pathogenic lifestyles |
| GE06 | 37351 | Ana Carolina Barbosa Caetano | A novel hierarchical in silico approach for the prediction of drug and vaccine targets against Chlamydophila pneumoniae |
| GE07 | 37287 | André de Souza Santos | The genomic basis for the variable biochemical profiles that lead to erroneous identifications of emerging pathogenic Corynebacterium spp. |
| GE08 | 37512 | Arthur Gruber | Combining profile Hidden Markov Models and small RNA pattern based strategies to identify novel Endogenous Viral Elements (EVEs) and exogenous viruses |
| GE09 | 38936 | Arthur Lorenzi Almeida | Relative Evaluation of NoSQL Databases For Manipulating Genotype Data |
| GE10 | 37470 | Augusto Schrank | Genomic identification and patterns of expression of secondary metabolite gene clusters in the entomopathogen fungus Metarhizium anisopliae. |
| GE11 | 36641 | Bárbara Zanandreiz de Siqueira Mattos | Genotoxicity testing in-silico: quantification of the DNA mutation caused by the glycosidic bond hydrolysis |
| GE12 | 37273 | Braulio Roberto Gonçalves Marinho Couto | Linear Algebra Methods for Inferring Phylogenies Based on Peptides Frequencies Vectors: An Efficient Alternative Method to Investigate Relationships among Genes, Genomes and Organisms |
| GE13 | 36437 | Brena Mota Moitinho Sant'Anna | In silico genomic analysis of the endophytic bacterium Bacillus amyloliquefaciens 629 |
| GE14 | 38837 | Carolina Guimarães Ramos Matosinho | CattleQTLdb analysis to increase understanding of the functions of milk proteins genes |
| GE15 | 38438 | Daniel Vasconcelos Rissi | A comparison of two pipelines for metagenomic 16S rRNA using Ion Torrent (PGM) Sequencing Platform |
| GE16 | 38893 | Darueck Acácio Campos | Inference of distant homologs in Protozoa by pHMM–pHMM (profile Hidden Markov Model) comparison for the identification of superfamilies |
| GE17 | 38511 | DAVID BATISTA MAUÉS | Genome mining of biosynthetic gene clusters in Nostoc sp. CACIAM 19, a cyanobacterium from an Amazonian environment |
| GE18 | 37027 | Doglas Parise | Assembly, annotation and comparison of Corynebacterium pseudotuberculosis lineages |
| GE19 | 37381 | Felipe Borim Correa | Establishment of a pipeline for 16S-based metagenomic studies of Mycobacterium leprae |
| GE20 | 37245 | Filipe Pereira Matteoli | Draft genome of Serratia marcescens UENF 22-GI: a plant growth promoting bacterium isolated from vermicompost |
| GE21 | 37799 | Flavia Figueira Aburjaile | Characterization of phage sequences on Corynebacterium pseudotuberculosis genomes |
| GE22 | 38531 | Gabriel Wajnberg | The discovery of novel multiple small deletions within human coding genes associated to known lung cancer pathways. |
| GE23 | 36697 | Hanaisa de Pla e Sant Anna | Admixture Mapping of Brazilians Identifies New Obesity Susceptibility Loci |
| GE24 | 38704 | Helisson Faoro | Genomic analysis of opportunistic bacteria from Herbaspirillum genus isolated from immunocompromised patients |
| GE25 | 37454 | Hemanoel Passarelli Araujo | Prediction and analysis of plasmids from multidrug-resistant Klebsiella pneumoniae and Enterobacter aerogenes clinical isolates |
| GE26 | 38746 | Heron Hilário | Draft genome sequence of the extremophile endemic marine antarctic yeast Metchnikowia australis |
| GE27 | 37575 | Hugo Rody Vianna Silva | GBS data from a population of modern sugarcane variety reveals duplicate genes retained by breeding process |
| GE28 | 38513 | Ígor Bonadio | Ab initio characterization of promoter regions based on Conditional Random Fields |
| GE29 | 38573 | Isabella Tanus Job e Meira | Identification of somatic mutations in prostate adenocarcinoma with Gleason score 7 and 8 and their associations with biochemical recurrence |
| GE30 | 38868 | Janynne Stephanie de Oliveira Palheta | Metagenomic analysis of the Southern Brazilian Atlantic Forest soil using next-generation sequencing technologies |
| GE31 | 36229 | Jerusa Botelho Souza | Design of chimeric antigens of Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) through bioinformatics approaches: a rational model for the development of a diagnostic test |
| GE32 | 37456 | João Luís Reis Cunha | Chromosomal copy number variation reveals extensive levels of genomic plasticity among and within Trypanosoma cruzi DTUs |
| GE33 | 37461 | João Luís Reis Cunha | Modular variability of multigene families encoding surface proteins uncovers differential composition of motifs among Trypanosoma cruzi strains |
| GE34 | 37313 | Juliano De Oliveira Silveira | Searching for genomic elements of sexual reproduction in a microsporidian pathogen |
| GE35 | 37449 | Kanhu charan Moharana | Impact of non-synonymous mutations in adaptive diversification and domestication of soybean |
| GE36 | 37064 | Larissa Catharina Costa | Identification of Specific Enzymes in the Comparison between Fusarium oxysporum and Arabidopsis thaliana |
| GE37 | 38525 | Simone Nantes de Aquino | Study of Chromatin Remodeling in Colorectal Cancer Progression |
| GE38 | 37312 | Cristóvão Antunes de Lanna | Genotypic characterization of Vibrio parahaemolyticus strains isolated in Brazil |
| GE39 | 37921 | Leandro de Oliveira Santos | Comparative genomic analysis of clinical and environmental strains of Vibrio parahaemolyticus isolated in Brazil: insight into their virulence potencial |
| GE40 | 37922 | Leandro de Oliveira Santos | Identification of Pho regulon genes and Pho box-like sequences in genomes of clinical and environmental isolates of Vibrio parahaemolyticus from Brazil |
| GE41 | 38402 | Letícia de Castro Oliveira | Characterization of the probiotic and stress resistance-related genes of Lactococcus lactis subsp. lactis NCDO 2118 through comparative genomics and in vitro assays. |
| GE42 | 36767 | Liliane Conteville | Diagnostic metagenomics: a case study based on suspected dengue infection |
| GE43 | 38799 | Luís Henrique | Spacial Organization of Genomes: Insights on coordinated regulation of Biological Pathways |
| GE44 | 38850 | Luiza de Almeida Ferreira Diniz | In silico identification of the effects of genetic variants in transcription factors recognition sites in regulatory regions of candidate genes for reproductive disorders in cattle |
| GE45 | 37154 | Marcele Laux | Within and between gene variants: tracking for potential targets for populational linkage according to the metagenomic profile in a changing freshwater environment |
| GE46 | 40196 | Marcus Vinicius Canário Viana | Complete genome sequence of Corynebacterium pseudotuberculosis 33 |
| GE47 | 38309 | MAURICIO DE ALVARENGA MUDADU | Genotype imputation of Hereford and Bradford bovine breeds from Brazil |
| GE48 | 38729 | Melise Chaves Silveira | An hierarchical classification system for beta-lactamases |
| GE49 | 39144 | Melline Fontes Noronha | Metagenomics insights reveals functional patterns among soil microbial communities of global biomes |
| GE50 | 37350 | Murillo Peterlini Tavares | In silico prediction of auxiliary activity enzymes secreted by the fungus Chrysoporthe cubensis |
| GE51 | 38906 | Rafael Cabus Gantois | Comparative Genomics between two different biovars of Corynebacterium pseudotuberculosis isolated in the same host |
| GE52 | 37072 | Rafael Lucas Muniz Guedes | A comparative in silico linear B-cell epitope prediction for South American and African Trypanosoma vivax strains |
| GE53 | 36776 | Rafael Mina Piergiorge | Detection of Functional Analogous Enzymes in the Human Metabolism |
| GE54 | 37266 | Rafaela Leite Prado Rocha | LTR retrotransposons in Hemileia vastatrix genome |
| GE55 | 38795 | Raquel Riyuzo de Almeida Franco | Diversity analysis of Howler monkey (Alouatta spp.) fecal microbiota |
| GE56 | 37251 | Rennan Garcias Moreira | Variant in the PDE4B related to Acute Lymphoblastic Leukemia relapse is differentiated in Native Americans |
| GE57 | 38528 | sandeep tiwari | Cell cycle and metabolism related candidate human synthetic lethal network |
| GE58 | 36785 | Sergio Mascarenhas Morgado | tRNA array genomic survey unravels their presence and structure in Mycobacteria |
| GE59 | 37972 | Sheila Tiemi Nagamatsu | Identification of genetic variations in engineered yeast for xylose consumption and acetic acid resistance applied to second generation ethanol production |
| GE60 | 38526 | Tahila Andrighetti | Taxonomic identification of metagenomics reads based on sequence features by Support Vector Machines (SVM) |
| GE61 | 38218 | Syed babar Jamal Bacha | In silico approaches to predict the impact of leukemic DNMT3a mutations & Identification of leads based on drug decitabine using Complex Based Pharmacophore Mapping and Virtual Screening |
| GE62 | 38219 | Syed babar Jamal Bacha | In-silico analyses for the discovery of drug and vaccine targets in Corynebacterium camporealensis: A Novel Hierarchical Approach |
| GE63 | 38718 | Tania Carlice Lopes Pereira dos Reis | Investigation of mutations in the HBB gene using the 1000 GENOMES databank |
| GE64 | 36368 | Thaís Cunha de Sousa Cardoso | Prediction of microRNAs and miRNA pathway genes in Solanum lycopersicum and Solanum pennellii |
| GE65 | 38686 | Thiago de Jesus Sousa | Detection and correction mis-assemblies in genome of Corynebacterium pseudotuberculosis |
| GE66 | 37346 | Túlio Morgan | Identification and variability analysis of monooxygenase gene family from Chrysoporthe cubensis |
| GE67 | 38477 | Victor Barbosa | Insights into Klebsiella penumoniae type VI secretion system regulation |
| GE68 | 37311 | Victor Octavio Borda Pua | Inferring the genetic structure and the history of interaction between Andean and Amazonian human populations using genome-wide data |
| GE69 | 38823 | Bruna Piereck Moura | HD-zip classification in Vigna unguiculata and comparative synteny with Phaseolus vulgaris |
| Software Development and Databases- 17th November | |||
| Code | Subm ID | Presented by | Tittle |
| SW01 | 37555 | Bruna Piereck Moura | Text mining for HPC |
| SW02 | 36487 | Alessandra Lima da Silva | R script to HLA epitope predictor based in matrix frequency: training and performance comparisons |
| SW03 | 38674 | Aryel Marlus Repula de Oliveira | NCBI NR Protein Database Clustered by Homology Inference |
| SW04 | 37841 | Bruno Henrique Ribeiro da Fonseca | A comprehensive database of mirtrons knowledge |
| SW05 | 36863 | Carlos Alves Moreira | Development a Predictor of Aggregation-protein using Supporting Vector Machine |
| SW06 | 38695 | Carlos Biagi Jr | Meta-analysis of Japanese Toxicogenomics data: differences between in vivo and in vitro models |
| SW07 | 36860 | Dhiego Souto Andrade | Alien: A tool for handling sequence alignments |
| SW08 | 38544 | Diônata Willian Augusto | Evaluation of predictor programs of genomic islands |
| SW09 | 40621 | Fabiano Menegidio | Dugong: a Docker image, inspired on Ubuntu Linux, designed to enhance reproducibility and replicability during computational analyses of biological data |
| SW10 | 38302 | Fábio Danilo Vieira | BDGF: a database and web-based information retrieval system for genotype and phenotype |
| SW11 | 37442 | Felipe Carrara Couto | Software Assessment for Prediction of Gene Clusters: An Analysis in silico with Cyanobacteria of Chroococcales Order |
| SW12 | 37447 | Felipe Carrara Couto | Brimer: A Web System for Managing Primers |
| SW13 | 38506 | Fernanda Luz Castro | Impact of genomic RNA structure and non-coding RNAs in Zika virus neuropathogenesis |
| SW14 | 36528 | Foued Salmen Espindola | Patent Mining as a Tool for Innovation Planning and Biodiversity Access: Technologies of Açai Fruit (Euterpe oleraceae Mart). |
| SW15 | 36958 | Gilderlanio Santana de Araújo | Towards Transparent and Reproducible Bioinformatics Analyses: the EPIGEN-Brazil Scientific Workflow |
| SW16 | 36699 | Jaqueline Ramalho | mirhunt: an approach to predict microRNA binding sites using different prediction tools |
| SW17 | 37379 | Jaqueline Yu Ting Wang | Noninvasive prenatal paternity determination by SNPs and microhaplotypes |
| SW18 | 37896 | Laura Rabelo Leite | Linking microbial community composition and potential functional roles using shotgun metagenomic libraries |
| SW19 | 38716 | Leandro Costa do Nascimento | The Polyploid Gene Assembler (PGA) |
| SW20 | 38841 | George de Vasconcelos Carvalho Neto | ATENA: A decision support system for classifying genetic variants and clinical diagnosis |
| SW21 | 38852 | George de Vasconcelos Carvalho Neto | The importance of an adequate soft-clip based approach on bioinformatics pipelines for multiplex targeted next-generation sequencing |
| SW22 | 38011 | Leo Rodrigues Biscassi | DevOps cloud-computing environment to perform virtual screening |
| SW23 | 37395 | Liliane Santana Oliveira Kashiwabara | Novel bioinformatic approaches for viral discovery from NGS data |
| SW24 | 38637 | Lucas Ferreira | Capturing experimental detail in a paperless environment – Scarab, an Electronic Lab Notebook developed and used at the Structural Genomics Consortium |
| SW25 | 38643 | Lucas Ferreira | Have you ever wanted to learn about the cladistics origin of operons? Take our TAXI (Taxonomic Innovations) |
| SW26 | 40034 | Luiz Carlos Junior Alcantara | An automated method for the identification of Dengue, Zika, Yellow Fever and Chikungunya virus species and genotypes |
| SW27 | 37744 | Maria Fernanda Hussni | Database Model for Fish Collection |
| SW28 | 37075 | Mariana Teixeira Dornelles Parise | LabControl: a LIMS software to manage microbial data |
| SW29 | 38748 | Marlon Amaro Coelho Teixeira | Using Data Marts to Select Related Research Articles: A Case Study for the Prioritization of Drug Targets |
| SW30 | 37490 | Michele Araújo Pereira | HaploCYP: a software for CYP2D6 genotyping and phenotype prediction |
| SW31 | 38616 | Natalia Baptista Cruz | miRNApath II: plataform to identify miRNAs targets and pathways regulated by miRNAs |
| SW32 | 38431 | Néli José da Fonseca Júnior | PFStats: A tool for protein analysis by decomposition of residue coevolution networks and amino acid reduced alphabets applications |
| SW33 | 38489 | Pedro Kássio Ribeiro Matos Loureiro de Carvalho | Classifiers for patients with breast cancer according to the neoadjuvant chemotherapy sensitivity |
| SW34 | 38709 | Pedro Magalhães Martins | A database for comparative analysis of paradigms for prospecting contacts in protein-protein interfaces |
| SW35 | 38732 | Marcos F M Silva | An approach for constructing a database of manually curated contacts in proteins |
| SW36 | 38626 | Ricardo Medeiros da Costa Junior | Identifying Alternative Splicing Events in RNAseq data using De Bruijn Graphs and Bloom Filters |
| SW37 | 38536 | RICARDO VOYCEIK | DNAShot: an application to Blast DNA Sequence from photos using smart-phone |
| SW38 | 38622 | Sérgio Nery Simões | A graphical tool for data integration and analysis of complex diseases |
| SW39 | 37453 | Thiago Peixoto Leal | Network Algorithm To Relatedness Analysis (NAToRA) |
| SW40 | 40019 | Vagner Soares Ribeiro | visGReMLIN: An interactive strategy to visualize common substructures in protein-ligand interaction |